PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078682.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 555aa    MW: 60764.1 Da    PI: 7
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-18262311255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lre++P++    ++K +Ka+ L ++++YI+ Lq
  XP_011078682.1 262 RSKHSATEQRRRSKINDRFQKLREIIPNS----DQKRDKASFLLEVIDYIQFLQ 311
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-24257333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-18260336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-15262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-16262315No hitNo description
SMARTSM003534.6E-13266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MELPQSRPLG TEGRKATHDF LSLYSSPPAQ QDPTPSQGGY LKTHDFLQPL ERIGKNSTTT  60
KDENRGMAAV EKPPVPCPPT SVEHILPGGI GTYSISYFNQ RAQKPEGNLF TAQTSSTTRN  120
DENSNCSSYS GGGFTLWDES AIKKGKTGKE NIVAERHVLR EAGVNMVGAQ WMSMLEKPSQ  180
SSSNNKHNTA TFSSFSSSQP SSSQKNQSFM DMITSAKNDK EEDDDEEEDE FVIKKEPSPF  240
AKGNLSVKVE AKTIDQRPNT PRSKHSATEQ RRRSKINDRF QKLREIIPNS DQKRDKASFL  300
LEVIDYIQFL QDKVSRYENS YNAWNHDPSK MMQWRSCHIA DGFIDHTRGA NAEPAQASVF  360
ATKFDENKAG VSSSLPINGQ NLVDSDIATA TTFKERSQQP ELTSKAAPVH QPIPPNIFSF  420
GGTSIAASPV SPKQASDTDN RITWPPSQSQ QNACTDDGNK MKDGEPTIES GTINISSVYS  480
QGLLNTLTQA LQSSGVDLSQ ACISVQIDLG KRATNIPHSK TSAAKDDHAP ASMPRSGAAS  540
AGEEFSHALK RLRTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078682.10.0transcription factor BIM1 isoform X1
TrEMBLA0A142CD140.0A0A142CD14_9LAMI; Transcription factor BIM1
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-107bHLH family protein