PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078299.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 348aa MW: 38192.7 Da PI: 7.1077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	214	252	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_011078299.1 214 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 252 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.75	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-10	212	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.60E-6	212	256	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-7	216	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MNQGVVQSSP VQQMVASGSP TWWNINSMRP PPHYHQHHSF LAAPPHHHFP HHLTPPLLAT 60 SSWNDSQELP ESWSQLLLGG LVGEEDKPGL SHMQAKKLEN WEQQLLNHTS NSCAVDTLKQ 120 ETSASSYTYG PGNVEFQSAK PTNCWSHQIV SASSPKSCVT TLSNNMLDFS PKSSDLKHPH 180 QDPSSECNSS MVTGGAAKKA RIQPSSAQST FKVRKEKLGD RITALHQLVS PFGKTDTASV 240 LLEAIGYIRF LQSQIEALSL PYLGSGSGTT RQQHPVQGER NCLFPEDSGQ LMNENCIKRK 300 GISEECDEEA KKDLRSRGLC LVPISCTLHV GSDNGADYWA PAFGANFR

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MNQGVVQSSP VQQMVASGSP TWWNINSMRP PPHYHQHHSF LAAPPHHHFP HHLTPPLLAT  60
SSWNDSQELP ESWSQLLLGG LVGEEDKPGL SHMQAKKLEN WEQQLLNHTS NSCAVDTLKQ  120
ETSASSYTYG PGNVEFQSAK PTNCWSHQIV SASSPKSCVT TLSNNMLDFS PKSSDLKHPH  180
QDPSSECNSS MVTGGAAKKA RIQPSSAQST FKVRKEKLGD RITALHQLVS PFGKTDTASV  240
LLEAIGYIRF LQSQIEALSL PYLGSGSGTT RQQHPVQGER NCLFPEDSGQ LMNENCIKRK  300
GISEECDEEA KKDLRSRGLC LVPISCTLHV GSDNGADYWA PAFGANFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078299.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078299.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	9e-95	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2G9H454	1e-170	A0A2G9H454_9LAMI; Uncharacterized protein
STRING	VIT_11s0016g03560.t01	1e-162	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]