PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078231.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 466aa MW: 51930.7 Da PI: 6.7067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.9	2e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ ++L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF+k++k y+tg+rk+r+++ XP_011078231.1 47 LPAGVKFDPTDQELI-DHLEAKVEGKEskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHKTSKDYTTGTRKRRKIQtecdlqgg 139 799**********.99*****6665443333333666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_011078231.1 140 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-38	42	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.884	47	208	IPR003441	NAC domain
Pfam	PF02365	1.7E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MNKSNQLGSV SSSELIDAKL EEHQLCGSKQ CPGCGHMLEG KPDWVGLPAG VKFDPTDQEL 60 IDHLEAKVEG KESKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHKTSKDY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS GAALLNTAAG EGNSERRETV 240 SVSVSGSMSV SGSSKEMNIT QRDDFSAAPP VNVAAPIPSY SAIDIQQLKA DHFSFLPFRK 300 SFDEAGNIGE TSIAREAGGG GTCEEREMGQ HHVSHEHDIG QHHVSHEHHH HSHQIAAATA 360 FHISRPSHSI STIISPPPLH HTSINILDQD HSFHVPRIIL PPENFQQQQQ QHHKLGGRSA 420 SGLEELIMGC TSTDIKEESS MGNPQEAEWL KYSTFWPDPD NPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MNKSNQLGSV SSSELIDAKL EEHQLCGSKQ CPGCGHMLEG KPDWVGLPAG VKFDPTDQEL  60
IDHLEAKVEG KESKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHKTSKDY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS GAALLNTAAG EGNSERRETV  240
SVSVSGSMSV SGSSKEMNIT QRDDFSAAPP VNVAAPIPSY SAIDIQQLKA DHFSFLPFRK  300
SFDEAGNIGE TSIAREAGGG GTCEEREMGQ HHVSHEHDIG QHHVSHEHHH HSHQIAAATA  360
FHISRPSHSI STIISPPPLH HTSINILDQD HSFHVPRIIL PPENFQQQQQ QHHKLGGRSA  420
SGLEELIMGC TSTDIKEESS MGNPQEAEWL KYSTFWPDPD NPDHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE579090	2e-85	HE579090.1 Sesamum indicum microsatellite DNA, locus SSR SESAME7, clone BSISR7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078231.1	0.0	uncharacterized protein LOC105162027 isoform X1
Refseq	XP_020549344.1	0.0	uncharacterized protein LOC105162027 isoform X1
Refseq	XP_020549345.1	0.0	uncharacterized protein LOC105162027 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2G9HLT5	0.0	A0A2G9HLT5_9LAMI; Uncharacterized protein
STRING	Migut.K00558.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-173	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]