PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078230.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 467aa MW: 52057.9 Da PI: 6.7596

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.9	2e-36	49	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ ++L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF+k++k y+tg+rk+r+++ XP_011078230.1 49 LPAGVKFDPTDQELI-DHLEAKVEGKEskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHKTSKDYTTGTRKRRKIQtecdlqgg 141 799**********.99*****6665443333333666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_011078230.1 142 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-38	41	210	IPR003441	NAC domain
PROSITE profile	PS51005	32.884	49	210	IPR003441	NAC domain
Pfam	PF02365	1.7E-16	50	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MNKSNQLGSV SSSELIDAKL EEHQLCGSKQ CPGCGHMLEG KPVRDWVGLP AGVKFDPTDQ 60 ELIDHLEAKV EGKESKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHKTSK 120 DYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE 180 KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSD RSGAALLNTA AGEGNSERRE 240 TVSVSVSGSM SVSGSSKEMN ITQRDDFSAA PPVNVAAPIP SYSAIDIQQL KADHFSFLPF 300 RKSFDEAGNI GETSIAREAG GGGTCEEREM GQHHVSHEHD IGQHHVSHEH HHHSHQIAAA 360 TAFHISRPSH SISTIISPPP LHHTSINILD QDHSFHVPRI ILPPENFQQQ QQHHKLGGRS 420 ASGLEELIMG CTSTDIKEES SMGNPQEAEW LKYSTFWPDP DNPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MNKSNQLGSV SSSELIDAKL EEHQLCGSKQ CPGCGHMLEG KPVRDWVGLP AGVKFDPTDQ  60
ELIDHLEAKV EGKESKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHKTSK  120
DYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSD RSGAALLNTA AGEGNSERRE  240
TVSVSVSGSM SVSGSSKEMN ITQRDDFSAA PPVNVAAPIP SYSAIDIQQL KADHFSFLPF  300
RKSFDEAGNI GETSIAREAG GGGTCEEREM GQHHVSHEHD IGQHHVSHEH HHHSHQIAAA  360
TAFHISRPSH SISTIISPPP LHHTSINILD QDHSFHVPRI ILPPENFQQQ QQHHKLGGRS  420
ASGLEELIMG CTSTDIKEES SMGNPQEAEW LKYSTFWPDP DNPDHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE579090	2e-85	HE579090.1 Sesamum indicum microsatellite DNA, locus SSR SESAME7, clone BSISR7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549346.1	0.0	uncharacterized protein LOC105162027 isoform X2
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2G9HLT5	0.0	A0A2G9HLT5_9LAMI; Uncharacterized protein
STRING	Migut.K00558.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-176	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]