PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 353aa MW: 39826.7 Da PI: 6.8341

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.5e-08	139	159	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd+C FaHg XP_011078221.1 139 ACPDFRK-GNCRKGDSCEFAHG 159 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.042	91	123	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	3.4	115	121	No hit	No description
SMART	SM00356	4.0E-6	134	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.08	135	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	139	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-6	139	159	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	166	196	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.6	169	192	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.432	169	193	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.012	174	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MMLGERSYGG TAVHVPPWSP TAEDPGSYPF SPTAGNVNSS ADDYYLYFQN DSLKALQRFL 60 PSNSNDAVAE FQVPDSDNGG TGDFLPVDAH SCDHFRMFEF KVRKCTRGRS HDWTECPFAH 120 PGEKARRRDP RKFHYSGTAC PDFRKGNCRK GDSCEFAHGV FECWLHPARY RTQPCKDGMN 180 CKRRVCFFAH SPDQLRVLSP RAETFDGSPR RLAFMSPPEP VSPPSESPPM SPMTPTSVNE 240 MVASMRQLHL NKVKSMPSTW LGSSSSPRLK MTPPGYFSLP TTPTRTITRP GISYFETWDS 300 PQQEEEEPME MVESGRDLRA KMFEKLSKEN PLERVDPEPN PNPDVGWISD LVT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MMLGERSYGG TAVHVPPWSP TAEDPGSYPF SPTAGNVNSS ADDYYLYFQN DSLKALQRFL  60
PSNSNDAVAE FQVPDSDNGG TGDFLPVDAH SCDHFRMFEF KVRKCTRGRS HDWTECPFAH  120
PGEKARRRDP RKFHYSGTAC PDFRKGNCRK GDSCEFAHGV FECWLHPARY RTQPCKDGMN  180
CKRRVCFFAH SPDQLRVLSP RAETFDGSPR RLAFMSPPEP VSPPSESPPM SPMTPTSVNE  240
MVASMRQLHL NKVKSMPSTW LGSSSSPRLK MTPPGYFSLP TTPTRTITRP GISYFETWDS  300
PQQEEEEPME MVESGRDLRA KMFEKLSKEN PLERVDPEPN PNPDVGWISD LVT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078221.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078221.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-114	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2G9H9E7	0.0	A0A2G9H9E7_9LAMI; CCCH-type Zn-finger protein
STRING	Migut.K00565.1.p	1e-180	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-104	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]