PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 404aa MW: 44194.7 Da PI: 8.2123 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.6e-12 | 4 | 26 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + elCr+f+r G C+yGdrCkF H XP_011078164.1 4 RKELCRNFQR-GSCQYGDRCKFLH 26 789*******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 17.497 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-7 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 6 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MPPRKELCRN FQRGSCQYGD RCKFLHASPS PQQSKTNPFG FGMQTSATFQ RTNQQQQMPN 60 PFGFGVQNNN QLRGANNFGS QPNQFKPFEN KWTRFSPINS SSASASRQSE NQPQAPNHKC 120 TDSESCRRVI MEDLENEKPL WKLTCYGHNR NGPCDIVGDI SCEELRALAY DDAKQGKSLQ 180 FIIERERSLL NSKLVEFQNL VQKPHTVSPF GTPSTQNPFG TPSTQNPFGG GSLNAPNINN 240 VVPPPASNFG QLTASLNTGS AAVPNYTFGQ SSIFQNNSQP SNMFQMNNSP FNSSVGTSGS 300 QVPQQSVQRP FFGSASSTSS AINAHSNPFS TFANIPTGSA FGKQLDFVSN GPNSASSAIG 360 QSSIQLNDNL PANPNVDDSI WTKAEWKWNV GEIPEVPPPD IYIH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078164.1 | 0.0 | zinc finger CCCH domain-containing protein 46 isoform X1 | ||||
Refseq | XP_020549342.1 | 0.0 | zinc finger CCCH domain-containing protein 46 isoform X1 | ||||
TrEMBL | A0A2Z7CPK3 | 1e-139 | A0A2Z7CPK3_9LAMI; Zinc finger CCCH domain-containing protein 16 | ||||
STRING | Solyc12g009390.1.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9439 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 4e-62 | C3H family protein |