PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077893.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 376aa    MW: 41605.5 Da    PI: 9.2594
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.63.4e-26135179145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  XP_011077893.1 135 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEA 179
                     79****************************************986 PP
2QLQ44.54.6e-166196136
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    s+F+ +Q+q+L+ Q+l++++++a++ vPpeLl  ++
  XP_011077893.1 61 SYFSLSQWQELELQALIFRHMIAGAAVPPELLHLVK 96
                    78*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-76197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.1956297IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-116295IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.223135179IPR014977WRC domain
PfamPF088792.2E-22136178IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEFNLKQWRD ESEEEEHQTP SAKLPRIQHH PPALPLFVPD SNTNLSAYSP DPAAKFPRMG  60
SYFSLSQWQE LELQALIFRH MIAGAAVPPE LLHLVKKSLI NTSSSQYYLS HSLHRCYPYQ  120
PALLQSGYWS RAAMDPEPGR CRRTDGKKWR CSRDVVAGQK YCERHMHRGR NRSRKPVEAP  180
TSTTSAYGGD AGGETTLKSN HSITGQGIST GAGDRPHFTL SVPSQSTALL HLNRRPSDSI  240
TETKAPFEAQ HNVQYSGQML RRFLDDWPKP LDETENAANS VASATNLSIS MPGNPSSDFS  300
LKLGTGNRDE ASAQVLTGER VKPQLNWSTS WRTNPTAPMG GPLAEALRSS IPNSSPTSVL  360
QRLPRGLTSE ASYVNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077893.10.0growth-regulating factor 3
TrEMBLA0A2G9HGY71e-159A0A2G9HGY7_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-71growth-regulating factor 4