PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077828.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 266aa    MW: 29817 Da    PI: 7.2187
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.18.8e-34861941100
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k ltpsdv+k++rlv+pk++ae+h           +   e++  l++ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F +
  XP_011077828.1  86 FEKPLTPSDVGKLNRLVIPKQHAEKHfplnvggggreS--GEKGLLLSFEDELGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVIFAR 178
                     99******************************987532..347779************************************************9 PP

                     -SSSEE..EEEEE-SS CS
              B3  85 dgrsefelvvkvfrks 100
                     + +++++l+++++r++
  XP_011077828.1 179 QPEDCGRLFIGWRRRN 194
                     888**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4078195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-3181192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-3084183No hitNo description
PfamPF023621.4E-3086194IPR003340B3 DNA binding domain
SMARTSM010193.4E-2586194IPR003340B3 DNA binding domain
PROSITE profilePS5086314.60786194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSIDRCSPDP NSATAYWDGP RQLHHQADAA AGAMFCRQSP AYSFNLNDED DEELLQEQAA  60
DDGELTTNRQ SEGEDHTQRI PKEPLFEKPL TPSDVGKLNR LVIPKQHAEK HFPLNVGGGG  120
RESGEKGLLL SFEDELGKSW RFRYSYWNSS QSYVLTKGWS RFVKEKRLDA GDIVIFARQP  180
EDCGRLFIGW RRRNTGGGQK SGAAQPPPGG GGGGGWSRVL YPNQYPYPRQ HHQGSSSLPY  240
QSVCPHPGYE FLSRRCASAW MRSEVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49821934113B3 domain-containing transcription factor NGA1
5os9_B3e-49821934113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077828.10.0B3 domain-containing protein At5g06250 isoform X2
SwissprotQ9FNI35e-56Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G9HGL24e-92A0A2G9HGL2_9LAMI; Uncharacterized protein
STRINGMigut.J00664.1.p6e-73(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-50B3 family protein