PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077811.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 328aa    MW: 35814.8 Da    PI: 9.9439
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.33.5e-30171226258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +p++VNaKQy++I++RR++Rak+e ++kl  k rkpylh SRh hA+rRpRgsgGrF
  XP_011077811.1 171 APIFVNAKQYNAIMRRRKARAKAELQNKL-LKRRKPYLHLSRHLHAMRRPRGSGGRF 226
                     69***************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-33168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.12169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26172226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-22172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-22203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSTMHSVFFK EQEGIALNDS NAPPSEVACW NLGLGSQPAA AAGGAYSYGD AFIQSKLAAA  60
VLELSAGGNQ FNVGKVSEDL QALGKGDSTH FTLFSGDSRI AENGAKNLQT LSSFQPYPTM  120
DYQVPFKLGF GQPMICGQYP YAEHCYGLYS TYGTQIAGRM MLPLNMASDG APIFVNAKQY  180
NAIMRRRKAR AKAELQNKLL KRRKPYLHLS RHLHAMRRPR GSGGRFLNTK TIMKRTDKEE  240
KQQPQRTESQ IFEVLQSDGA GINSKGLANV ISGCISPAGS EVTSQLFSTA TMIRRFQINH  300
LNASFQPVRD LANTGLGITL DAGNYLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-16172231463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A4e-16171227360HAPB protein
4g92_A4e-16171227360HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185203RRKARAKAELQNKLLKRRK
2185204RRKARAKAELQNKLLKRRKP
3186204RKARAKAELQNKLLKRRKP
4197203KLLKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077811.10.0nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A2G9GYH61e-131A0A2G9GYH6_9LAMI; Uncharacterized protein
STRINGMigut.L01823.1.p1e-108(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-35nuclear factor Y, subunit A10