PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077810.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 332aa    MW: 36321.3 Da    PI: 9.7265
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.6e-30175230258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +p++VNaKQy++I++RR++Rak+e ++kl  k rkpylh SRh hA+rRpRgsgGrF
  XP_011077810.1 175 APIFVNAKQYNAIMRRRKARAKAELQNKL-LKRRKPYLHLSRHLHAMRRPRGSGGRF 230
                     69***************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-33172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.12173233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-22176198IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-26176230IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-22207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSTMHSVFFK EQEGIALNDS NAPPSEVACW NLGLGSQPAA AAGGAYSYGD AFIQSKLAAA  60
VLELSAGGNQ FNVGKVSEDL QALGKGDSTH FTLFSDYDLG DSRIAENGAK NLQTLSSFQP  120
YPTMDYQVPF KLGFGQPMIC GQYPYAEHCY GLYSTYGTQI AGRMMLPLNM ASDGAPIFVN  180
AKQYNAIMRR RKARAKAELQ NKLLKRRKPY LHLSRHLHAM RRPRGSGGRF LNTKTIMKRT  240
DKEEKQQPQR TESQIFEVLQ SDGAGINSKG LANVISGCIS PAGSEVTSQL FSTATMIRRF  300
QINHLNASFQ PVRDLANTGL GITLDAGNYL KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-16176235463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A4e-16175231360HAPB protein
4g92_A4e-16175231360HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189207RRKARAKAELQNKLLKRRK
2189208RRKARAKAELQNKLLKRRKP
3190208RKARAKAELQNKLLKRRKP
4201207KLLKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077810.10.0uncharacterized protein LOC105161718 isoform X1
RefseqXP_020549354.10.0uncharacterized protein LOC105161718 isoform X1
TrEMBLA0A2G9GYH61e-128A0A2G9GYH6_9LAMI; Uncharacterized protein
STRINGMigut.L01823.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.29e-35nuclear factor Y, subunit A10