PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 758aa MW: 86996.9 Da PI: 6.8545

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.7	7.2e-116	385	756	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+a++++d ++a++lL+++++++sp gd qRla+yf+ +L+arla+++s++ k l +++t+ +++ l+a+ ++ P+ k+s+ XP_011077642.1 385 LRTLLINCAQAIAADDRRNANELLKQIKQHSSPFGDGSQRLAHYFAHGLEARLAGTGSQMHKDLFSQRTT---MTDYLKAYYTYLASAPFRKISN 476 6789********************************************************99999888...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ +++ rvHiiDf+i +G+QWp+++q La+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+n+ +a+++e+ XP_011077642.1 477 FASNKTIMMRSQKSMRVHIIDFGILYGFQWPTFIQRLAEREGGPPKLRITGIDFPQPGfrPAERIEETGRRLAHYARTFNVPFEYNA-IAQKWET 570 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ e+L+++++E+++Vn+ ++ ++l+de++ es r+ +L+l+++++P+++++ + ++++ F++rf e l ++salfd+le+++pr++ er XP_011077642.1 571 IRAEDLKIEKDEVVVVNCLYRSKNLVDETMLAESSRTMILNLIRKINPDIFIHGIVNGAYGAPFFVTRFREVLFHFSALFDMLETNIPRDKPERL 665 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er ++gre++nv+aceg er+er et+++W+ r +aGF ++p++ ++++a+ ++ ++ + y ++e+s++l++gWk+r ++++S+W+ XP_011077642.1 666 LIERDIFGREAMNVIACEGWERVERPETYKQWQVRNLRAGFIQIPFDRWIMDTARKKVKAFYHKDYIIDEDSQWLLMGWKGRIIYALSCWK 756 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.58	359	736	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-113	385	756	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MDPHIHGFFN SSNRIQLGNQ STAEFSNWDG PGFEITYPDQ KQVHRHRNQS SSFQQPSNGG 60 VHLLSNQPFS NGNVSSSFVD IEDYYRDDCD FSDAVLRYID QMLMEEDMED KLHMLQESLD 120 FQAKERSFYE VLGKKYPPSP HPESALFSPC RESADDYFIY VDRHNSRTNS GDGSGYLIDV 180 VDPNWINSRT DYDPSLVPCH TTYNLSNACI SSSSSLNGFS DSPISPLQIH ETWCESQPVW 240 NFRKGVEEAS RFLPSGSELL VNLGVDGLLR QDPKEGESKV EKDEVRRSPS ESRGKKNCHC 300 ADTDLEEERI SKLPAVSADS DVPIEEFDAV LLNSLGEGRR KFGAYREELQ NAASKNMQQN 360 GQTKGSGGGK GRDKKRNRKK QVIDLRTLLI NCAQAIAADD RRNANELLKQ IKQHSSPFGD 420 GSQRLAHYFA HGLEARLAGT GSQMHKDLFS QRTTMTDYLK AYYTYLASAP FRKISNFASN 480 KTIMMRSQKS MRVHIIDFGI LYGFQWPTFI QRLAEREGGP PKLRITGIDF PQPGFRPAER 540 IEETGRRLAH YARTFNVPFE YNAIAQKWET IRAEDLKIEK DEVVVVNCLY RSKNLVDETM 600 LAESSRTMIL NLIRKINPDI FIHGIVNGAY GAPFFVTRFR EVLFHFSALF DMLETNIPRD 660 KPERLLIERD IFGREAMNVI ACEGWERVER PETYKQWQVR NLRAGFIQIP FDRWIMDTAR 720 KKVKAFYHKD YIIDEDSQWL LMGWKGRIIY ALSCWKPV

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MDPHIHGFFN SSNRIQLGNQ STAEFSNWDG PGFEITYPDQ KQVHRHRNQS SSFQQPSNGG  60
VHLLSNQPFS NGNVSSSFVD IEDYYRDDCD FSDAVLRYID QMLMEEDMED KLHMLQESLD  120
FQAKERSFYE VLGKKYPPSP HPESALFSPC RESADDYFIY VDRHNSRTNS GDGSGYLIDV  180
VDPNWINSRT DYDPSLVPCH TTYNLSNACI SSSSSLNGFS DSPISPLQIH ETWCESQPVW  240
NFRKGVEEAS RFLPSGSELL VNLGVDGLLR QDPKEGESKV EKDEVRRSPS ESRGKKNCHC  300
ADTDLEEERI SKLPAVSADS DVPIEEFDAV LLNSLGEGRR KFGAYREELQ NAASKNMQQN  360
GQTKGSGGGK GRDKKRNRKK QVIDLRTLLI NCAQAIAADD RRNANELLKQ IKQHSSPFGD  420
GSQRLAHYFA HGLEARLAGT GSQMHKDLFS QRTTMTDYLK AYYTYLASAP FRKISNFASN  480
KTIMMRSQKS MRVHIIDFGI LYGFQWPTFI QRLAEREGGP PKLRITGIDF PQPGFRPAER  540
IEETGRRLAH YARTFNVPFE YNAIAQKWET IRAEDLKIEK DEVVVVNCLY RSKNLVDETM  600
LAESSRTMIL NLIRKINPDI FIHGIVNGAY GAPFFVTRFR EVLFHFSALF DMLETNIPRD  660
KPERLLIERD IFGREAMNVI ACEGWERVER PETYKQWQVR NLRAGFIQIP FDRWIMDTAR  720
KKVKAFYHKD YIIDEDSQWL LMGWKGRIIY ALSCWKPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-50	391	757	25	380	Protein SCARECROW
5b3h_A	3e-50	391	757	24	379	Protein SCARECROW
5b3h_D	3e-50	391	757	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077642.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077642.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2G9GCN1	0.0	A0A2G9GCN1_9LAMI; Uncharacterized protein
STRING	Migut.L01952.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein