PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077348.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 688aa    MW: 76010.1 Da    PI: 7.1301
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +
  XP_011077348.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAE 211
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v ++r+
  XP_011077348.1 212 NGDLCVEIRRA 222
                     8889****996 PP
2Auxin_resp116.91.7e-38287370183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++F+vvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_011077348.1 287 AATLAASGQPFDVVYYPRASTPEFCVKASLVKAAMQIHWCSGMRFKMAFETEDSSRISWfMGTISSVQVIDPIRWPNSPWRLLQ 370
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-36113225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-29116223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-21120221No hitNo description
PfamPF023625.3E-21121222IPR003340B3 DNA binding domain
SMARTSM010193.2E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042121223IPR003340B3 DNA binding domain
PfamPF065071.1E-33287370IPR010525Auxin response factor
PROSITE profilePS5174518.179602680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MITFIESKGK MKETEKCLDS HLWHACAGSM VQMPPVNSKV FYFPQGHLEH ACVKVDIGNY  60
PTFPSYIPCK VSAVKFMADP ETDEVFVKIR LVPIAGNEVD FDNDGAIRLN GTENQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGEI WKFRHIYRGT  180
PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA ENGDLCVEIR RAKRGIGGEP EMSLGWSQIG  240
GKGIVPCGGF QALLSKKESN LTRNRNENEG GSLISRGQVK AEDVIEAATL AASGQPFDVV  300
YYPRASTPEF CVKASLVKAA MQIHWCSGMR FKMAFETEDS SRISWFMGTI SSVQVIDPIR  360
WPNSPWRLLQ VRWDEPDLLQ NVKRVSPWLV ELVSNMPTID LSPFSPPHKK LRLQQNPDFP  420
LDGQLPLPAF CGNHVRRSGN HLGCLADKTP AGMQGARHAQ YGLSLSDLNL ITLQSGLFPV  480
GFLPRDGASV SSGDPNSVTL KPGSNENTTS LLTMGNSAQG SREKSHNEKS APFLLFGQPI  540
IVKKQSSSSD TVSTIPADNN SSDCNADRIG NTCDRSISTF HRSDVPERSS CEVFQSELRL  600
EIEHCKVFME SKDVGRTLDL SLLGSYEELH RKLTDMFGNE ISETPNHVHY RDTAGVVRQL  660
GDEPFSNFMK TARRLTIVAD SSSDNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-811839151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077348.10.0auxin response factor 18
RefseqXP_020549689.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GAL70.0A0A2G9GAL7_9LAMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]