PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077316.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 356aa MW: 38309.9 Da PI: 6.0902

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	169	215	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_011077316.1 169 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 215 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-12	169	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	170	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	170	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.77E-5	179	218	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.8E-4	252	329	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MCDNNKENQE NILHVLTDNI EGFQIQDQSL IPQMQQQNTS ADAYIGVGGG GGGGGGGGGG 60 GGGGSTLTFP EVSQILPWTL PSVHNFNPVH DPFLLPPPAP PSYGGLFNRR PSGLQFGYDG 120 GSSDHHLRLI SESLGQVVHP SSAPFGLHAE LQKMTAQEIM DAKALAASKS HSEAERRRRE 180 RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS LIAETSLVPT EMDELTVDNA 240 SDEDGKPVIK ASICCEDRSD LLPDLIKTLK ALRLRTLKAE ITTLGGRVKN VLFITGEEDS 300 NSSGNGDHQG EPQQYSISSI QEALKAVMEK SNGDESGSGS VKRQRTNISI LEHRSL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MCDNNKENQE NILHVLTDNI EGFQIQDQSL IPQMQQQNTS ADAYIGVGGG GGGGGGGGGG  60
GGGGSTLTFP EVSQILPWTL PSVHNFNPVH DPFLLPPPAP PSYGGLFNRR PSGLQFGYDG  120
GSSDHHLRLI SESLGQVVHP SSAPFGLHAE LQKMTAQEIM DAKALAASKS HSEAERRRRE  180
RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS LIAETSLVPT EMDELTVDNA  240
SDEDGKPVIK ASICCEDRSD LLPDLIKTLK ALRLRTLKAE ITTLGGRVKN VLFITGEEDS  300
NSSGNGDHQG EPQQYSISSI QEALKAVMEK SNGDESGSGS VKRQRTNISI LEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077316.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ041951	6e-60	KJ041951.1 Sesamum indicum clone TilSSR_13152 microsatellite Sesame_13152 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077316.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-102	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2G9I1N8	1e-176	A0A2G9I1N8_9LAMI; Uncharacterized protein
STRING	POPTR_0008s11490.1	1e-157	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-87	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]