 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_011077234.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
| Family |
RAV |
| Protein Properties |
Length: 354aa MW: 39357.3 Da PI: 9.5751 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011077234.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 43.3 | 9e-14 | 56 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g
XP_011077234.1 56 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 104
689***9788.8*********3.....5*************************98 PP
|
| 2 | B3 | 103.9 | 8.3e-33 | 183 | 282 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l led+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ +++
XP_011077234.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNLEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDIVSFQRSTIPDKQ 277
89****************************778889***************************************************75447777 PP
.EEEE CS
B3 92 lvvkv 96
l++ +
XP_011077234.1 278 LYIDW 282
77665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDASSADEST TSDSLSTTPS PIKPPEISLC RMGSGTSVII DAENGVEAES RKLPSSRFKG 60
VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AARAYDTAAQ RFRGRDAVTN FKPLAEKEDE 120
IEAAFLSSHS KAEIVDMLRK HTYNDELEQS RRNYAGNKMA KDGLFSLSSG GGDRALKARE 180
QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LQNGNNSKGV LLNLEDKGGK VWRFRYSYWN 240
SSQSYVLTKG WSRFVKEKNL RAGDIVSFQR STIPDKQLYI DWKPRNNGSN AAAIGLSGLV 300
QPVQMVRLFG VNIFEAPRNG GDAAAIDSCS GKRLREMEIL GLECSKKQRV IDAL
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
|
