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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 732aa MW: 83020.6 Da PI: 7.7439 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 384.1 | 1.7e-117 | 358 | 729 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+++d + a+++L++++++a+p+gd mqRla+yf+ +L ar+a+s++++y +l +ts +++l+a++++ ++P+ k+s+ XP_011077208.1 358 LRTLLTLCAQAVAADDRRTANEFLKQIRQHATPTGDGMQRLAHYFADGLVARMAGSGTQIYTSLINMPTS---AADVLKAYHIYLATCPFRKISN 449 5789************************************************************999988...89******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN++I++ ++ +r+HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g +e++eetg+rLa++Ae+++vpfefn+ +a+++e+ XP_011077208.1 450 FFANKTIMNLSAKVTRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDLPCPGfrPSERVEETGRRLARYAETFKVPFEFNA-IAQKWET 543 *******************************************************99999***************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ +llde+v ++s+r+ vL+l+++++P v+v+ + ++n++ F +rf eal +ys+lfd+lea +pre +er+ XP_011077208.1 544 ITLEDLKINTDELLVVNCLYRFRNLLDETVMVNSPRNIVLNLIRKMNPAVFVLGIVNGSYNAPFFITRFREALFHYSSLFDMLEAIIPREIHERM 638 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er ++gre++nv+ace aer+er et+++W++r ++a F+++pl+++++k a+ ++ + + + ++e+ +++++gWk+r ++++S+Wr XP_011077208.1 639 LLERIVFGREAMNVIACEAAERIERPETYKQWQARNMRARFEQLPLDKEIMKMARNRVESSYHKDFVIDEDGHWMLQGWKGRIVYALSSWR 729 **************************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.636 | 332 | 709 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-115 | 358 | 729 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MSRIKFNNKA VPVSPDPNMI EYLRVSDRFL DRNVVDNMPV SSQFSFDARG PSSEGEYPVD 60 FDFSDVVLKY INHILMEEEV EDKTCMFQES AALQAAEKSF YEVLGEQYPA STDYQLLPNL 120 DLNTESPDDK FSGELKSYCG SGDMGALCTD WHTDPYYDRI GGHHVTGNLV SQSVSLSSYS 180 SSSNDTIIDG PIDSPVSTLK VPHIFGGNES AMQFKKGVEE ARKFLPSGSK LIVDMKYDKS 240 VEKKQKEGRT SMVVKVEKNI NNDESSDLSR GKKNPYHESM GLQDERSSKQ SATYSESTVT 300 PEMFDKVLLC SGGRNESALR KELSEVSKLT PQIAYLKGSS GGKTRVKKQG GKRNVVDLRT 360 LLTLCAQAVA ADDRRTANEF LKQIRQHATP TGDGMQRLAH YFADGLVARM AGSGTQIYTS 420 LINMPTSAAD VLKAYHIYLA TCPFRKISNF FANKTIMNLS AKVTRLHIID FGILYGFQWP 480 CFLQRLSSRP GGPPKLRITG IDLPCPGFRP SERVEETGRR LARYAETFKV PFEFNAIAQK 540 WETITLEDLK INTDELLVVN CLYRFRNLLD ETVMVNSPRN IVLNLIRKMN PAVFVLGIVN 600 GSYNAPFFIT RFREALFHYS SLFDMLEAII PREIHERMLL ERIVFGREAM NVIACEAAER 660 IERPETYKQW QARNMRARFE QLPLDKEIMK MARNRVESSY HKDFVIDEDG HWMLQGWKGR 720 IVYALSSWRP AY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-49 | 358 | 729 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077208.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077208.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020549007.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020549008.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2G9G822 | 0.0 | A0A2G9G822_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F00778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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