PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20999.9 Da PI: 4.6729 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe +r da++s+vyeA+ar+rdPvyG++g i +lq q+++l+aela XP_011077047.1 38 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEAQRADAVNSMVYEANARLRDPVYGCAGAICQLQYQISELQAELA 132 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011077047.1 133 KAQAE 137 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.644 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEYSENTTAI ATAEPSPSAV SPTSSSSPPS SPPVILSPCA ACKILRRRCA EKCVLAPYFP 60 PTEPLKFTIA HRVFGASNII KLLQELPEAQ RADAVNSMVY EANARLRDPV YGCAGAICQL 120 QYQISELQAE LAKAQAEILN MQCQNANLFE LIGKQVAAET DRQPQTLPSV HENTTFFFDE 180 SILGVAWEPL WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-43 | 37 | 143 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-43 | 37 | 143 | 10 | 116 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077047.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077047.1 | 1e-140 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2G9HGU7 | 1e-91 | A0A2G9HGU7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F02029.1.p | 7e-89 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-62 | LOB domain-containing protein 1 |