PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076983.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 833aa MW: 91508.2 Da PI: 6.2753

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.5	3.1e-15	27	85	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k t++t+ q+e+Le++++++++p+ +r ++ ++ g++ +q kvWFqN+R +ek+ XP_011076983.1 27 KYTRYTEAQIEVLEKVYAECSNPNYFQRSKILREQpnlrGIDSKQLKVWFQNHRSREKQ 85 789**************************9999999*****************97 PP
2	START	123.6	2.5e-39	172	376	3	202
HHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 aee +e++ ka+ ++ +W+ +++++ ++ + s+++ g a+ra+++ + ++++ e+l d++ W+++++ +++l+ g ga++l+ XP_011076983.1 172 AEEIREEFLCKATGTAVNWKAILtVKLPSPSSVGAIYVSDTCIGVAARACTIIPIEPVKIIEILKDRA-SWSRNCRNVDVLAEYPAGngGAIELI 265 788899**************9999*****999999*************8877777777.***********99999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a++++++ Rdf+++Ry+ + +g++v+++ Sv+ + +p+ ++vR+++l Sg+li+p+++g s ++ ++h dl+++++++++r+l+ XP_011076983.1 266 YTQYYAPTTMACaRDFWTLRYTSVSVDGSFVVCEKSVSGSDAVPSspaVLEFVRGRMLASGYLIHPCEGG-SIIHLIDHLDLEASSVPEVVRPLY 359 **************************************9986656689*************9.******************** PP HHHHHHHHHHHHHHTXX CS START 186 ksglaegaktwvatlqr 202 +s+ + ++ v +l++ XP_011076983.1 360 ESSELVAKNMIVPALEY 376 *99999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-13	21	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.734	22	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.3E-12	23	87	IPR009057	Homeodomain-like
SMART	SM00389	4.1E-7	24	90	IPR001356	Homeobox domain
CDD	cd00086	7.59E-11	27	87	No hit	No description
Pfam	PF00046	8.6E-13	27	85	IPR001356	Homeobox domain
CDD	cd14686	4.40E-4	79	118	No hit	No description
PROSITE profile	PS50848	21.173	161	389	IPR002913	START domain
SMART	SM00234	3.4E-30	170	380	IPR002913	START domain
Pfam	PF01852	1.5E-36	172	376	IPR002913	START domain
SuperFamily	SSF55961	7.83E-25	172	359	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.0E-18	210	353	IPR023393	START-like domain
Pfam	PF08670	3.1E-33	690	832	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MAITENAVGE TSKRVKGAKS GHEQGSKYTR YTEAQIEVLE KVYAECSNPN YFQRSKILRE 60 QPNLRGIDSK QLKVWFQNHR SREKQKKENG ELLAENKKLA AANELLREEN DCLQQKVAQL 120 ICENEYLQTQ FLSLISRNKA TTKTTDLGLA ARANSPQLPL WSADNNSLLV LAEEIREEFL 180 CKATGTAVNW KAILTVKLPS PSSVGAIYVS DTCIGVAARA CTIIPIEPVK IIEILKDRAS 240 WSRNCRNVDV LAEYPAGNGG AIELIYTQYY APTTMACARD FWTLRYTSVS VDGSFVVCEK 300 SVSGSDAVPS SPAVLEFVRG RMLASGYLIH PCEGGSIIHL IDHLDLEASS VPEVVRPLYE 360 SSELVAKNMI VPALEYIEHT ASETHDKRSH AYGEGPAFLR SFSQRLSRGF NDAITGFTED 420 GWTLLDADAP GDIIVSVKRL KNFEDNRNYD SVICMKASLL LQKVLPAKLM MLLKERRSCW 480 MNINLADHSA VFLGPACFAF PGSRTYNLSG TGVLLGHTNY EDEILEVLRF DRIAHPQHNV 540 SSGDLYHLQI CNGMEDSGVG ACSELIFAPI DRTITNDAVL LSSGFRIISL PSNASSANMN 600 STGPSNATNV GTAASKPSSV LILAFQFPFE THLQDKVASI ARKYVQHVIS YVKNISLEAM 660 PSGSNPETAS NKSDPATRLM IAPDSTYAAT LANLICQSYR SNLGVEIFGC NCPSTDSLLE 720 LIRHHQYAIL CFAFTSLPVC LYANQAGLDL LETTANNLLS LTVDRILGGS NNFSLSSILP 780 TIMQQGYAIL PPGYCISEMN RRVSYEQAVV WQVQGSDGSV PCLALAFMNW SFT

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MAITENAVGE TSKRVKGAKS GHEQGSKYTR YTEAQIEVLE KVYAECSNPN YFQRSKILRE  60
QPNLRGIDSK QLKVWFQNHR SREKQKKENG ELLAENKKLA AANELLREEN DCLQQKVAQL  120
ICENEYLQTQ FLSLISRNKA TTKTTDLGLA ARANSPQLPL WSADNNSLLV LAEEIREEFL  180
CKATGTAVNW KAILTVKLPS PSSVGAIYVS DTCIGVAARA CTIIPIEPVK IIEILKDRAS  240
WSRNCRNVDV LAEYPAGNGG AIELIYTQYY APTTMACARD FWTLRYTSVS VDGSFVVCEK  300
SVSGSDAVPS SPAVLEFVRG RMLASGYLIH PCEGGSIIHL IDHLDLEASS VPEVVRPLYE  360
SSELVAKNMI VPALEYIEHT ASETHDKRSH AYGEGPAFLR SFSQRLSRGF NDAITGFTED  420
GWTLLDADAP GDIIVSVKRL KNFEDNRNYD SVICMKASLL LQKVLPAKLM MLLKERRSCW  480
MNINLADHSA VFLGPACFAF PGSRTYNLSG TGVLLGHTNY EDEILEVLRF DRIAHPQHNV  540
SSGDLYHLQI CNGMEDSGVG ACSELIFAPI DRTITNDAVL LSSGFRIISL PSNASSANMN  600
STGPSNATNV GTAASKPSSV LILAFQFPFE THLQDKVASI ARKYVQHVIS YVKNISLEAM  660
PSGSNPETAS NKSDPATRLM IAPDSTYAAT LANLICQSYR SNLGVEIFGC NCPSTDSLLE  720
LIRHHQYAIL CFAFTSLPVC LYANQAGLDL LETTANNLLS LTVDRILGGS NNFSLSSILP  780
TIMQQGYAIL PPGYCISEMN RRVSYEQAVV WQVQGSDGSV PCLALAFMNW SFT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076983.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076983.1	0.0	homeobox-leucine zipper protein REVOLUTA-like isoform X3
TrEMBL	A0A2G9GVC8	0.0	A0A2G9GVC8_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRING	Migut.F01757.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	0.0	HD-ZIP family protein