PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076975.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 671aa    MW: 74060.6 Da    PI: 6.6247
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24120221199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_011076975.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 210
                     89****************************986445444..8999*********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_011076975.1 211 NGDLCVGIRRA 221
                     8999****997 PP
2Auxin_resp115.73.9e-38284367183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++FevvY+Prast+eFvv+ ++v++a++v++++GmRfkmafetedss++++ +Gt+++v+  dp++WpnS+Wr+L+
  XP_011076975.1 284 AANLAAKGQPFEVVYYPRASTPEFVVRESSVRDAMRVHWCAGMRFKMAFETEDSSRISWfMGTISSVQVDDPIHWPNSPWRLLQ 367
                     7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-38112224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30113223IPR015300DNA-binding pseudobarrel domain
CDDcd100176.40E-22119220No hitNo description
PfamPF023624.2E-22120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239120222IPR003340B3 DNA binding domain
SMARTSM010199.0E-23120222IPR003340B3 DNA binding domain
PfamPF065076.1E-33284367IPR010525Auxin response factor
PROSITE profilePS5174515.478585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MINVMHSMNK PLDPQLWHAC AGGMAQIPPE NSKVYYFPQG HAEHANKNVD FGVFPRIPSL  60
ILCRVSSIKY LADAESDEVY ARIRLVPLSG NGFGDVNDDD DGIGFLGFDK NEEKEKTNSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGEVW KFRHIYRGTP  180
RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGGGPE VVSCGWNANC  240
GSPLYRGFSE FLGENGSLCI GNGKKGDGAC KLGLNLRAES VVEAANLAAK GQPFEVVYYP  300
RASTPEFVVR ESSVRDAMRV HWCAGMRFKM AFETEDSSRI SWFMGTISSV QVDDPIHWPN  360
SPWRLLQVVW DEPDLLQNVK RVNPWLVELV SSIPASHLSP FSPPRKRPRI PQPSEFPLGQ  420
LPLPTLLSNP ISPFCCLPDN IATGLQGTRH AQIELSQSDL QFKKLQPFDF KLLDYANNRF  480
QNPNSDALSC SLKNGSPTRK LNKNGDAKMA NFRLFGQPIL TAEQVSRSYS VDTEGNSLSD  540
GNHETMANVS NGSGSAVIQN FPPEASSDGE FPRFSDQKLD LGLGTGHCKV FVESEDVGRI  600
LDLSVLGSYE EMYRRLGAMF GMERSEMTSN VLYTDAEGAT KHTGDEPFSD FVKKARRLTI  660
LTDSGSVNLG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-781239651396Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076975.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GV600.0A0A2G9GV60_9LAMI; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]