PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076972.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 328aa    MW: 35540.7 Da    PI: 5.2429
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17247280134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_011076972.1 247 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 280
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-711324IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-16241291IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451241277IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14245278IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15245304No hitNo description
CDDcd002026.97E-14246293No hitNo description
PfamPF003204.0E-15247280IPR000679Zinc finger, GATA-type
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESNFVDEID CGSFFDQMDD LIEFPPDNDC GDGNLISSGD CEDFTNMWND ALPDADPFFS  60
GSHVDCASDL SAELSVPYED IVQLEWLSTF VEDSFSGGGL TIGKENLSID VESSRNPFRT  120
SSPVSVLESS SSSSSCSGGK TMPLSPSHRG TQRARSKRPR PPTFNPRTAI QLISPSSSSI  180
ETETPQPVFA LGFSSESDNF ADSPPKKKVP KPAETEQKKH KKIKITLPAD PTATRNDPPA  240
QAAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFVPSLHSN  300
SHKKVIEMRS KVGPITQAAA PELVPNAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076972.10.0GATA transcription factor 8-like
RefseqXP_011076974.10.0GATA transcription factor 8-like
TrEMBLA0A2G9GV451e-150A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009598426.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein