PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 39228.6 Da PI: 4.2792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 111 | 159 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W+AeIrdp + kr++lg++ taeeA +a++ r+++e XP_011076904.1 111 KYRGVRQRK-WGKWAAEIRDPI----QhKRVWLGTYNTAEEASRAYELKRLEFE 159 8*******9.**********82....46**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-23 | 111 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.29E-24 | 111 | 151 | No hit | No description |
SMART | SM00380 | 2.5E-21 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.364 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-18 | 111 | 168 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MPEPRKPVPL NKETISRKQK FKPEPSRPMR KVRIICNDPD ATDSSDDEEV REKKVKRIIH 60 EVCLPIGEPT RVSKSTESES SVQDSNNGEK SSKKKRVLPL IESKPSPVTG KYRGVRQRKW 120 GKWAAEIRDP IQHKRVWLGT YNTAEEASRA YELKRLEFEA LANSTDFSSE KSSNDENDTP 180 VCSVVVSKPT ENLKQQNDAA LCVSEDSSGS AVSLTSHTSP SSVLELDSLT SAVNVKCEDE 240 KPIDASAEAN VVEQEVTVAD TGLMDEELMA LAQIGEELDL DMELHSLVAG GDFAPSLDDF 300 VDGFDDLPIC GFDDGDNPGA LPDFDFDFDL DACNEAFAWM DDAPTLMSGA TLNIACP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 110 | 170 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076904.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076896.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A2G9GJ62 | 1e-174 | A0A2G9GJ62_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00335.1.p | 1e-106 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 6e-34 | ERF family protein |