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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24297.2 Da PI: 4.4047 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.2 | 5.5e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+++Cv+apyf+ eq + +fa+vhk+FGasnv+kll +lp + r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++l+ e+ XP_011076841.1 7 SCGACKFLRRRCNDECVFAPYFCYEQaATHFAAVHKVFGASNVSKLLLHLPAHCRSDAAITISYEALARLHDPIYGCVAHIFALQQQVASLEDEI 101 6***********************99789****************************************************************** PP DUF260 95 allkee 100 + + ++ XP_011076841.1 102 EITASQ 107 998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.158 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTGLSSSCGA CKFLRRRCND ECVFAPYFCY EQAATHFAAV HKVFGASNVS KLLLHLPAHC 60 RSDAAITISY EALARLHDPI YGCVAHIFAL QQQVASLEDE IEITASQLMT DLGVDIATST 120 APYATSNYLY FPTQSNITSN CSQQEGPPIL HSGNASESQD WCSNMELQPP GTEYDISQGY 180 FNSSTATETL PQPLDQDAYL LEELINQGYD LHPLWMKNAA P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-33 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-33 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076841.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076841.1 | 1e-166 | LOB domain-containing protein 25-like | ||||
TrEMBL | A0A2G9GN36 | 7e-81 | A0A2G9GN36_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F00757.1.p | 4e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-56 | LOB domain-containing protein 33 |