PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076700.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 673aa    MW: 73304.4 Da    PI: 6.1623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49e-07269289526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f + G C  Gd C +aHg
  XP_011076700.1 269 PCPEFKK-GNCAKGDACEYAHG 289
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-1334152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.0E-1348184IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02577107IPR002110Ankyrin repeat
PROSITE profilePS5029713.44377147IPR020683Ankyrin repeat-containing domain
PfamPF136373.7E-878136No hitNo description
CDDcd002043.10E-1279175No hitNo description
SMARTSM002480.0054112144IPR002110Ankyrin repeat
PROSITE profilePS5008810.579112147IPR002110Ankyrin repeat
SMARTSM003564.7E-5264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122264291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4264290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001296327IPR000571Zinc finger, CCCH-type
SMARTSM0035625299322IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15299323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MCSGSKSEDC SFNLEMEAGF QEDKSVFLHK NCSKLLELAA TDDLAGFVCE VEERGCDFDE  60
GSFWYGRSFG SKRMGFEERT PIMIASLYGS TEVLKYIIGT GKVDVNRACG SDGATALHCA  120
AAGGSWSSVE IVELLIDACG DISAVDACGK KPGDLIAPCV KSSSNSKRRM LEMLLNGTGS  180
RAEEGDEEEG SKTPQAVKEG AEKKEYPVDV SLPDINTGIY GTDEFRMYNF KVKPCSRAYS  240
HDWTECPFVH PGENARRRDP RKFNYTCVPC PEFKKGNCAK GDACEYAHGV FESWLHPAQY  300
RTRLCKDETG CSRKVCFFAH KPEELRPLYA STGSAMPSPK SLSANSMDLT TLSPLSLGSS  360
SLILSNTSTP PVSPSVNCSS PMGGSMWQNK VNLTPPTLQL PGSRLKTTLS ARDVELDMEM  420
LGLEKIRTQQ QHQRQQLAEE MANLSSPYSR ITDLKPTNLD DVFGSLDPSL LSHMQGLSPT  480
INNTTSSQLQ SPTGLQIRQN MNQLRASYPP LSSSPARKPS AYGFDTSAAV AAAVMNSRST  540
AFTKRSQSFV DRAGVSYRPS LSGSANSPSL MPSKLSDWSS PNGKLDWGFN GDEANKLRKS  600
ASFGIRSGNT AAPAAMISSN IDDPDVSWVN SLVKDVPSGR TRLFSAEQKH GGVHDIMPYW  660
ADQMYMEQEQ MVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076700.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2G9I5810.0A0A2G9I581_9LAMI; CCCH-type Zn-finger protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein