PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076653.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 304aa    MW: 32902 Da    PI: 4.8292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10154198554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  XP_011076653.1 154 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 198
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.48E-11147203No hitNo description
SuperFamilySSF474599.42E-16147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTTNPPEGYA SDDFLEQILS IPSYAGLAGA DGTNSSETTS LSDAVSHLGP AAAAAPPHPP  60
PMFPLSLSLD NGRDAVNDNG AYAVKPEREA VNNNMGSLYP AFDHLQTHGL RHPAPQVQQA  120
FQGQPTPSTA VTLPQPPGIR PRVRARRGQA TDPHSIAERL RRERISERIK ALQELVPSCN  180
KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPLQAVED ETGEISNQHV  240
WEKWSNEETE REVAKLMEED VGAAMQYLQS KSLCIMPISL ASLIYPSNQS DDSTLVKPEP  300
PAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076653.10.0transcription factor UNE12
SwissprotO227681e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2G9HAN80.0A0A2G9HAN8_9LAMI; Uncharacterized protein
STRINGSolyc09g083220.2.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]