PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20156.7 Da PI: 5.4708 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.1 | 8.3e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+arardPvyG+vg i+ lq+q+++l+ +la XP_011076652.1 6 PCASCKLLRRRCAKDCVFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEANARARDPVYGCVGAISYLQNQVCELQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011076652.1 101 VAQAE 105 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.974 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCAKD CVFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVQQRA 60 DAVSSLVYEA NARARDPVYG CVGAISYLQN QVCELQMQLA VAQAEILCIQ MQQQEQQQQA 120 ALAPSLLQLE PDIDDDDDDH KSYFLHPHHL LNFTSDNSSA NVIYDSFKKE SHLYPHDMVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076652.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ041552 | 2e-58 | KJ041552.1 Sesamum indicum clone TilSSR_12753 microsatellite Sesame_12753 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076652.1 | 1e-131 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-71 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S2XL73 | 6e-85 | A0A1S2XL73_CICAR; LOB domain-containing protein 12-like | ||||
STRING | XP_004491008.1 | 3e-86 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-70 | LBD family protein |
Publications ? help Back to Top | |||
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