PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076587.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 356aa MW: 38560.6 Da PI: 5.9319

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.2e-09	155	203	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + XP_011076587.1 155 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 203 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	151	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	153	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-8	155	203	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-8	155	209	No hit	No description
SuperFamily	SSF57959	9.85E-11	155	206	No hit	No description
CDD	cd14703	3.88E-23	156	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MQDPNSKHSL NPTPSFPAAM RPAHHRRAHS EVNFRLPEDL DLVSDPFDAP AGSFEEMGSE 60 DDLFSTYMDI EKLNGGAGGG GGSGIGDSVL DNAGGGSGGA AVEEEEKSGG GVSRPRHRHS 120 NSVDSSSLLF NESSIEAKKA MAPDKLAELW TIDPKRAKRI LANRQSAARS KERKARYISE 180 LERKVQTLQT EATTLSAQLT LFQRDTTGLS NENTELKLRL QAMEQQAQLR DALNEALKQE 240 VERLRIATGE ISATTDTFNL AMQHVPYNQS AFFSPQPQPG PNDSQNVQMQ QFHTLPAGMS 300 SHQHPMLSAT PLQGLSDSLH QDPLGRFQGL GISSRSSHLV KSEGPSISAS ESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MQDPNSKHSL NPTPSFPAAM RPAHHRRAHS EVNFRLPEDL DLVSDPFDAP AGSFEEMGSE  60
DDLFSTYMDI EKLNGGAGGG GGSGIGDSVL DNAGGGSGGA AVEEEEKSGG GVSRPRHRHS  120
NSVDSSSLLF NESSIEAKKA MAPDKLAELW TIDPKRAKRI LANRQSAARS KERKARYISE  180
LERKVQTLQT EATTLSAQLT LFQRDTTGLS NENTELKLRL QAMEQQAQLR DALNEALKQE  240
VERLRIATGE ISATTDTFNL AMQHVPYNQS AFFSPQPQPG PNDSQNVQMQ QFHTLPAGMS  300
SHQHPMLSAT PLQGLSDSLH QDPLGRFQGL GISSRSSHLV KSEGPSISAS ESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076587.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076587.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2G9GG82	0.0	A0A2G9GG82_9LAMI; Uncharacterized protein
STRING	Solyc06g049040.2.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-100	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]