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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 28111.9 Da PI: 9.581 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.3e-12 | 76 | 128 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 rr h +ErrRR+++ + + Lr+llP +++ s + ++Av+YI+++q XP_011076503.1 76 RRILHRNIERRRRQEMSNLYTSLRSLLPLdH---VKGRRSVCDHMQEAVNYIQHMQ 128 7889*************************55...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.598 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 76 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.35E-10 | 76 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-11 | 76 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-6 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MFTLQPGDEL VFGTPSISEH DHKLFPDNLI TGHACIETNI INFSSSSSNN NNEQRDLPRF 60 RPRQGQSRSR DEYNIRRILH RNIERRRRQE MSNLYTSLRS LLPLDHVKGR RSVCDHMQEA 120 VNYIQHMQKN VQELRSHRDK LKKLPNLSST KAAAVSNGGD NLPNCSVTVE VIRDGVEILI 180 SSSMKNSEFR LSRVLAELLE RQLNVVTCVS TNAKEGFLHK IQAEASDMTK LDPLLLQERL 240 TKAIIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 87 | RILHRNIERRRR |
2 | 138 | 143 | DKLKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076503.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ052760 | 2e-56 | KJ052760.1 Sesamum indicum clone TilSSR_23961 microsatellite Sesame_23961 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076503.1 | 0.0 | transcription factor bHLH118-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 7e-23 | bHLH family protein |