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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 414aa MW: 45180.7 Da PI: 7.9647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 106 | 152 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ErrRRdr+++++ L+ellP+ + K + a+ L +A+++IksLq XP_011076307.1 106 HVSCERRRRDRMREKLTSLKELLPTT----ASKSDQASLLDQAIRHIKSLQ 152 7789*********************6....69******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.034 | 101 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 101 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-11 | 105 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-10 | 107 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSGRNSSHDE ANYCNQVVSK NAKSSGGEIP QDLIKFVSNV ELHPILRDPD EQLGESKNKL 60 DASSTKRLRM ECDGDRDRDR DGKYDDEGRE WKMRKHCKTS RSAQVHVSCE RRRRDRMREK 120 LTSLKELLPT TASKSDQASL LDQAIRHIKS LQSQFQVLSM GFHPSHIAHM PAAGQFHSSI 180 QRPSSSAPGR LEKAGIGMGF QVPYSPIPFL TPAPTTISPC VIPSSILHPS STHPLHQEST 240 SNSILPPTSF NPHHLSNVTL QQEVWPLSSH EMPLRRASGS ILNTGIGHGV GENDIPFSGR 300 GSNMFPSTPS DLSALHLSAT GLAPTFGPGV QSVAPALCPA SDSVAPSTYS RFSNFSHSLQ 360 GESGFPIVPR IGPETNQTPL PQDPFATIQS LQALPSSLIS SMLEMVNQTY RNTD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 114 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076307.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076307.1 | 0.0 | transcription factor bHLH119-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 4e-11 | phytochrome interacting factor 3-like 5 |