PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011076270.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 152aa MW: 17090.5 Da PI: 9.8695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.6e-11	9	61	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h Er+RR+++ ++ +r+llP+ +++K ++ + +Av+Y+k++q XP_011076270.1 9 KKIMHRDTERQRRQEMSGLYASIRSLLPQeY---TKGKRCASDHVGQAVNYVKHMQ 61 5789***********************77...9999999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-13	7	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.249	8	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-7	9	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.32E-7	9	65	No hit	No description
Pfam	PF00010	4.7E-8	10	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-4	59	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MDEGSTHTKK IMHRDTERQR RQEMSGLYAS IRSLLPQEYT KGKRCASDHV GQAVNYVKHM 60 QKKIEEMKMR RDKLKRLSNS SGPANTYAED QNSDMMSGSS NCVTVNGFHG AVEILMSSSF 120 NQGDFPLSKA IAHLLGRGLT DKSMMSQALI YL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	75	MRRDKLKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076270.1	1e-111	transcription factor bHLH36 isoform X2
TrEMBL	A0A2G9G1L6	6e-44	A0A2G9G1L6_9LAMI; Uncharacterized protein
STRING	XP_004300739.1	2e-36	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	7e-32	bHLH family protein