PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076175.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 320aa    MW: 35965.4 Da    PI: 8.9809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++lvd +++ G gtW+  ++  g+ R++k+c++rw +yl
   XP_011076175.1 30 RGVWTAEEDKILVDFITENGHGTWRNLPKLAGLLRCGKSCRLRWTNYL 77
                     899*****************************99************97 PP
2Myb_DNA-binding52.61e-1683128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++teE+  +++++  lG++ W++Ia++++ gRt++++k++w+++l
   XP_011076175.1  83 RGPFSTEEENTIIHLHGTLGNK-WAAIASHLP-GRTDNDIKNFWNSHL 128
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-212280IPR009057Homeodomain-like
PROSITE profilePS5129414.9382577IPR017930Myb domain
SuperFamilySSF466892.34E-2827124IPR009057Homeodomain-like
SMARTSM007172.0E-112979IPR001005SANT/Myb domain
PfamPF002491.4E-133077IPR001005SANT/Myb domain
CDDcd001678.68E-93377No hitNo description
PROSITE profilePS5129425.19578132IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2681132IPR009057Homeodomain-like
SMARTSM007179.7E-1682130IPR001005SANT/Myb domain
PfamPF002491.3E-1583128IPR001005SANT/Myb domain
CDDcd001678.94E-1185128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVKKRDNKEE KKKKKKKGKM SCCEREGVKR GVWTAEEDKI LVDFITENGH GTWRNLPKLA  60
GLLRCGKSCR LRWTNYLRPN IKRGPFSTEE ENTIIHLHGT LGNKWAAIAS HLPGRTDNDI  120
KNFWNSHLRK RVSNKALDQP PSSSKSVDIK SDTPSTRHMV QWESVRVEAE SRLSNKPLPL  180
RTPSGSKLGG DYFLRLWNSQ VGESFRNINE ITNECEGAAS HSPTSQTSSL TKAESGSRST  240
TIMGPFKTTS TPEMAGQKVE IWNCKRESEE VTAYSESSKS YEMDDSSDAM MKLLLDFPEG  300
GNDMGFLQGP DDDASAYIQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-242813225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216KKRDNKEEKKKKKKK
21016KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076175.10.0transcription factor MYB3-like
TrEMBLA0A2Z7BPG71e-126A0A2Z7BPG7_9LAMI; Uncharacterized protein
STRINGXP_010255443.11e-105(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.19e-92myb domain protein 17