PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011075620.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 257aa MW: 29821.6 Da PI: 6.5186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.8	6.2e-16	75	127	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+r+Ns ++ Lr+llP+ + + +Kls +++ ++v+YI +Lq XP_011075620.1 75 KKLNHNASERDRRKRMNSLYSSLRSLLPPeD---QTRKLSIPATVSRVVKYIPELQ 127 6789***********************66...9999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.224	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-15	74	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-13	75	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-5	75	131	No hit	No description
Pfam	PF00010	4.8E-13	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-11	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLDISPQFCS MGWLLEEEDP MFNHDQENGL NYLSRERPET SAGSIDLHSP CKNGEFNNEG 60 FHEGDDHESN NKMAKKLNHN ASERDRRKRM NSLYSSLRSL LPPEDQTRKL SIPATVSRVV 120 KYIPELQREV ERLTEKKEKL MMSKKICRQE KYTSMKKQQR HRKATQSSAI TQISDREIIV 180 QSSAEKGNYS SFCEAVMRLE VQEGFLLLNA SSFQSLDATT LFYTLHLQAQ ENQVIDTEML 240 KEKVWPFHEK GEEITLT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075620.1	0.0	transcription factor ORG2
TrEMBL	A0A2G9HLC3	1e-88	A0A2G9HLC3_9LAMI; Uncharacterized protein
STRING	Migut.J01664.1.p	8e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-37	bHLH family protein