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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21481.4 Da PI: 10.3107 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.2 | 1.5e-32 | 46 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers edp+vv++tYeg+H h+ XP_011075583.1 46 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSYEDPSVVITTYEGQHCHH 103 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 30 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 37 | 103 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.298 | 40 | 105 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 45 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 46 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MLLPASVHVL QCTQVGRSKS KKKVQIKRIR QPRFAFVTKS EVDHLEDGYR WRKYGQKAVK 60 NSPFPRSYYR CTNSKCTVKK RVERSYEDPS VVITTYEGQH CHHSVGYPRP AALNLITPHQ 120 VQDPAFASYF TPSTITLQNS VHSTQLRPHS HQLGKATGAS HGVDYHQGAS SEPDLVGQGL 180 LGDIVSPGMR KG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 38 | 102 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 38 | 102 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075583.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075656.2 | 1e-128 | probable WRKY transcription factor 57 isoform X1 | ||||
Swissprot | Q9C983 | 1e-54 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A4D9BP83 | 6e-63 | A0A4D9BP83_SALSN; Uncharacterized protein | ||||
STRING | XP_007157586.1 | 2e-62 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8031 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-57 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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