PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 325aa MW: 36157.6 Da PI: 7.7299

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.5e-18	179	233	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_011075258.1 179 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 233 788899***********************************************98 PP
2	HD-ZIP_I/II	127.6	5.3e-41	179	268	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +l XP_011075258.1 179 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELR-AL 268 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-18	173	236	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	175	235	IPR001356	Homeobox domain
SMART	SM00389	7.7E-15	177	239	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-17	179	233	IPR009057	Homeodomain-like
CDD	cd00086	4.11E-16	179	236	No hit	No description
Pfam	PF00046	3.2E-15	179	233	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	210	233	IPR017970	Homeobox, conserved site
SMART	SM00340	1.6E-25	235	278	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.7E-10	235	269	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MELALSLGDT PKPFSLLEKS QKILGKDLGF CMGMAVGKSD AENNSRCKET TGLFSADDDQ 60 RRSDSSSDLP VQLDLLPFSP VHRSHPSSHK FPFPWLTEKL GGDGVEGNMR RGGDEGHDQE 120 GASLSSPNSA VSSFQMDFCH VLRSGKRDFE QITSAGHEAA DRGTCSRGSD EEENGMLARK 180 KLRLSKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD 240 CEYLKKCCET LTEENRRLQK ELQELRALKA SQPFYMQLPA TTLTMCPSCE RVATTTTTTT 300 TTSSAAINNP SKLFSLSPPH QPASN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	235	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075258.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ050360	4e-61	KJ050360.1 Sesamum indicum clone TilSSR_21561 microsatellite Sesame_21561 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075258.1	0.0	homeobox-leucine zipper protein HOX11
Swissprot	P46665	6e-88	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A4D9B7B6	1e-137	A0A4D9B7B6_SALSN; Homeobox-leucine zipper protein
STRING	POPTR_0016s05890.1	1e-122	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-62	homeobox from Arabidopsis thaliana