PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075221.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 298aa    MW: 32936.8 Da    PI: 9.1389
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.3e-32161217158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e e+k+ ++ rkpylheSRh hAlrR+Rg+gGrF
  XP_011075221.1 161 EEPVYVNAKQYHGILRRRQLRAKAELENKV-TRVRKPYLHESRHLHALRRARGCGGRF 217
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.6E-36159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.309160220IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-27162217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-23163185IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860165185IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-23194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQQQYGKRGQ REFDAKGYNL CLGTGSQDRH NGIRDNFMSV NVLSRSTLGL NSVSQLNACW  60
GNLARESQVN SGRVSGMPDA VCRQEHGSLA SSIVPHAMDE HLMQETLQDQ SGGSNTCSSY  120
SYPDPCPRDS KLANARPQLI CPDLHGAPHC RTASSLALTL EEPVYVNAKQ YHGILRRRQL  180
RAKAELENKV TRVRKPYLHE SRHLHALRRA RGCGGRFINT KKSDSTAGNA THGEAKSTGD  240
SSLSNTLHCS RDSGYASSAS SRVVKPSTSM NEFKKFSLEE MKDAEFLQWT CPKDFFLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-22160225166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075221.10.0nuclear transcription factor Y subunit A-1-like
TrEMBLA0A2G9HGS52e-99A0A2G9HGS5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2042633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-35nuclear factor Y, subunit A7