PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075183.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 377aa    MW: 41853.7 Da    PI: 8.8992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13305350655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIksLq
  XP_011075183.1 305 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKSLQ 350
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16302361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-12303352No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14304364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYGDSHALSS DSSPIFPPNP KPKEESSVLP KQVVFMESDA NTSFSDYRQH FDGPQNNGLL  60
RYRSAPTSLL ENFANGAEKS ERLGSRFCSH EANDVSVLEN YDSRFVARNS DLPPQYPRQI  120
GAQLAFVSLG MDHQGQGKMG SGLMRQNSSP PGLFSHFNSQ NGYANIKNHM NFSSGMPSTL  180
GTLSRISEVE NENGRGIGLD GGKVGNSSGD NLYFSSGFPF GSWNDSSPFA ENFTSSIKRE  240
LDNDHKLFAN TQKDERGNRP NILSHHLSLS KTSAEMAAME KLLQLQDTVP CKIRAKRGCA  300
THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVDYIKSLQ KQYKTLSDNR  360
ANCKCSAAQK VVLNQTQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075183.10.0transcription factor bHLH130-like
SwissprotQ66GR31e-89BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2G9H6R11e-180A0A2G9H6R1_9LAMI; Uncharacterized protein
STRINGXP_009768432.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]