PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075166.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family SBP
Protein Properties Length: 369aa    MW: 39223.4 Da    PI: 9.039
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1382.8e-4372147176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC++dls+ak y++rhkvC +hsk+p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_011075166.1  72 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPRVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 147
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-3566134IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.51370147IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-4171152IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3273146IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEKGSSSSSS SAAGGGPDSL NGLKFGKKIY FEGVGSVLQP KAGGAPSPSA APPPSPAKKG  60
RTGLVQSGQP PRCQVEGCKV DLSDAKAYYS RHKVCGMHSK SPRVIVAGLE QRFCQQCSRF  120
HQLPEFDQGK RSCRRRLAGH NERRRKPPPG SLLSPRYGSL SSSMFDNHSK TGGFVMDFGA  180
YPTLSGKDSW PNTASERGMG NVAAITGKYQ FPWQSNSQNH LSDLLQGTTS GPSYSGPGVS  240
SEECYSGVSD SSSALSLLSN QPWGSRTRSL SLGANNFLGS SGSTVVQPSV NPGAAIDQFT  300
CPSWDFKGNQ ANNALHEMPP DLGLGQTSHP ANSQYTGELG LAQPSEGQFH ELDHSRGYDS  360
PVQHMHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31731461184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075166.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A2G9H6R70.0A0A2G9H6R7_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g06270.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-47squamosa promoter binding protein-like 9