PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRF | ||||||||
Protein Properties | Length: 357aa MW: 38931.2 Da PI: 8.9693 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.7 | 2.1e-23 | 87 | 131 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ ++k+CErH+hrgr+rsrk++e+ XP_011074968.1 87 DPEPGRCRRTDGKKWRCSKDAHTDSKYCERHMHRGRNRSRKPVES 131 79****************************************985 PP | |||||||
2 | QLQ | 65.3 | 1.4e-22 | 26 | 61 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ XP_011074968.1 26 PFTAVQWQELEQQAMIYKYLVAGLPVPPDLVMPIRR 61 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.8E-13 | 25 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-17 | 26 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.611 | 26 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.934 | 87 | 131 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-20 | 88 | 130 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSGIAPASVV GVRVAAGGVE VGYRAPFTAV QWQELEQQAM IYKYLVAGLP VPPDLVMPIR 60 RGFESLSARF GHHPSLGYGS YYGKKFDPEP GRCRRTDGKK WRCSKDAHTD SKYCERHMHR 120 GRNRSRKPVE SHSTSQSLSA AISHVSTRCR SNSGSVQGSG SGSFQRMPLY SVVSSGFSSQ 180 GSNVTKLQTE PVTYGIDAKE FRSIHGLPPA PNDHSPYLEA SGCVGSLGLG SSAGSGTWQL 240 MPSQVSSSSS YKLKSDSQLL NHSSAQQSMP RFQPIDAKHQ EQHCFFGSDA GLSEPVKQEQ 300 HPVHPFFSEW PTTKESWSNL DTDGSNENAF SSTQLSMSIP RTSCYFSSRN AYSTNDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074968.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303170 | 2e-56 | AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence. | |||
GenBank | AY303171 | 2e-56 | AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074968.1 | 0.0 | growth-regulating factor 4 | ||||
Refseq | XP_020547783.1 | 0.0 | growth-regulating factor 4 | ||||
Refseq | XP_020547785.1 | 0.0 | growth-regulating factor 4 | ||||
TrEMBL | A0A3Q7HTE3 | 1e-147 | A0A3Q7HTE3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g075950.1.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |