PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074759.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 437aa    MW: 50369.2 Da    PI: 6.4378
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.3e-24110207186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+ +v++Li+a++++ e+  ++            +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d
  XP_011074759.1 110 KWTDTMVRLLITAVSYISEEAAAEHgggsgrkytnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLD 204
                     7**************999999976555667788888**********************************************669***9999999 PP

        trihelix  84 qle 86 
                      ++
  XP_011074759.1 205 MMD 207
                     998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-22108233No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEGNLSSRNT MQGDGSFGGF DLQGPILVHH HQQLNSHPRQ GSSMLNHENF PLTMGSSRDC  60
DHTVSVAEYN KLERGKMVSD EDEPSFVEGV ADGRNDPSKG KKASMWQRVK WTDTMVRLLI  120
TAVSYISEEA AAEHGGGSGR KYTNLQKKGK WKSVSKVMAE RGHFVSPQQC EDKFNDLNKR  180
YKRLNEILGR GTSCEVVENP ALLDMMDHIS EKAKEEVRKI LSSKHLHYEE MCSYHNGNRL  240
HLPPDPELRR SLQLALRSRD DHDDNDVKRH PHEDNDEVDQ EAEFDDHGES EDNQALPGDH  300
RAYGLPGNPA KRVKHCQGHE DFSFRSCLNS VDCNKTFNFQ AENADSDANQ ATGDGPKSNA  360
MLQKQWMSHR NLQLEEQRLH IDLQMLELEK ERFKWQRFCR KKDRELEMMK MEIERMKLEN  420
ERMALELRRK EMGIDNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389401KERFKWQRFCRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074759.10.0uncharacterized protein LOC105159405
TrEMBLA0A2G9GZ520.0A0A2G9GZ52_9LAMI; Uncharacterized protein
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-143sequence-specific DNA binding transcription factors