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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_011074630.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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| Family |
SRS |
| Protein Properties |
Length: 300aa MW: 33290.6 Da PI: 6.887 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011074630.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 189.8 | 9.8e-59 | 102 | 241 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98
+++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaakrre+qqq+ ++ ++ +++ + +++++l + + + +
XP_011074630.1 102 AGVNCQDCGNQAKKDCVHMRCRTCCKSRGFPCQTHVKSTWVPAAKRREKQQQQPGSNLQQDQQQLTVGGENPKRL---------RENYPGGG--F 185
5689*********************************************99999987777666655555555544.........22222222..2 PP
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++lP+ev+s+a+frcv+vs+ dd+ee++aYqtav+igGhvfkGiLydqG+e+
XP_011074630.1 186 RELGRHLPPEVNSPALFRCVKVSATDDAEEHFAYQTAVNIGGHVFKGILYDQGPES 241
233467************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MSEFFSLGGG KEQDQDQQTD NNNSLFLFKN EEIYNKGFEL WQQYNQLHQQ RLVSQQQQQH 60
HSIQDVHFSI GPSNIGDEPS DYSYGSAAGF RVMNQGRGKN DAGVNCQDCG NQAKKDCVHM 120
RCRTCCKSRG FPCQTHVKST WVPAAKRREK QQQQPGSNLQ QDQQQLTVGG ENPKRLRENY 180
PGGGFRELGR HLPPEVNSPA LFRCVKVSAT DDAEEHFAYQ TAVNIGGHVF KGILYDQGPE 240
SQYSGGGGES SSACAGSSQQ SHDLITATTN QNVTMLDPSI YPPHLSGFMA GTQFFPPPRP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ063128 | 2e-56 | KJ063128.1 Sesamum indicum clone TilSSR_34329 microsatellite Sesame_34329 sequence. |
| GenBank | KJ063129 | 2e-56 | KJ063129.1 Sesamum indicum clone TilSSR_34330 microsatellite Sesame_34330 sequence. |
