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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11391.8 Da PI: 9.7722 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ da +++ ++ +W+ Iar + g+t+++++ ++ XP_011074553.1 15 SWTPKQNKQFEDALAMYDKDtpdRWHNIARAVS-GKTAEEVRRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.818 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 8.6E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-13 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-6 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-6 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MASSSMSSSR GSSSSWTPKQ NKQFEDALAM YDKDTPDRWH NIARAVSGKT AEEVRRHYEA 60 LEKDIMKIET DQVPIPNYKA MANGRGYGNE QRLLKNLKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-32 | 6 | 100 | 1 | 93 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074553.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074553.1 | 3e-70 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A022R1R6 | 4e-48 | A0A022R1R6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00487.1.p | 7e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 6e-34 | RAD-like 6 |