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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 27238.6 Da PI: 8.4695 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.8e-21 | 81 | 140 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_011074397.1 81 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 140 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118.4 | 3.2e-38 | 81 | 142 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq XP_011074397.1 81 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 142 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.414 | 76 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-12 | 77 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-7 | 78 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-19 | 81 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.24E-5 | 81 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-8 | 82 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKVHHFARGF WEHEPSLGCK RLRPLAPKLV TTPTTTTATT TVNAFDLKSF IRPESGPRKL 60 ESSDFEKKES AQVEAQQAGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE QITAQLGKYG 120 KIEGKNVFYW FQNHKARERQ KQKRNSLGLT HSLRTSASPF TTTTTTNYLL LSTSKDKKLL 180 QGEEGLDVSS YKRKWRSWGF DECVEEEEEE DSRYCCTEEE GEDRTLKLFP LHPEGRC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074397.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ037379 | 4e-60 | KJ037379.1 Sesamum indicum clone TilSSR_8580 microsatellite sesame_8580 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074397.1 | 1e-177 | WUSCHEL-related homeobox 4 isoform X1 | ||||
Swissprot | Q6X7J9 | 5e-69 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A2G9I8S0 | 1e-105 | A0A2G9I8S0_9LAMI; Uncharacterized protein | ||||
STRING | EOY14402 | 6e-99 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 4e-63 | WUSCHEL related homeobox 4 |