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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 14038 Da PI: 9.5305 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.4 | 4.9e-14 | 2 | 55 | 44 | 97 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ XP_011074366.1 2 SFIAAVPETKRPALFQSLLFEACGRTVNPVNGAVGLLSTGNWHICQAAVETVLA 55 68999********************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.619 | 1 | 59 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-10 | 2 | 53 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSFIAAVPET KRPALFQSLL FEACGRTVNP VNGAVGLLST GNWHICQAAV ETVLAGGVLR 60 PISVGIVAPN SDEASGWGNN QSTSKHKGVV HGSMGGSRNC MEKTASFGSG ISEVSRENRV 120 KGVGSKEPKL LNLFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074366.2 | 3e-93 | LOW QUALITY PROTEIN: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SZE8 | 9e-33 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2G9HX53 | 2e-49 | A0A2G9HX53_9LAMI; Uncharacterized protein | ||||
STRING | XP_009606111.1 | 5e-37 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-35 | LOB domain-containing protein 39 |