PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074290.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 334aa    MW: 37768.6 Da    PI: 4.7654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11171214654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_011074290.1 171 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 214
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15168231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9171214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-5172219No hitNo description
Gene3DG3DSA:4.10.280.102.1E-15172228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEYYTNENGF LEELLGVRET EEYNYYTNED SINGWSLDCF PTNAFAIPTT TATTNACCFQ  60
DLYAHHHDHH LQPLDCSAYA PSTFADELFA VDGAQTLPFC QEDYYYSMSI LDNEDIGALF  120
QNLDGSTRAP CKVEPEPEPA PAPEMLPGTF SMGFCPAKNK VKKGGQPSKN LMAERRRRKR  180
LNDRLSMLRS VVPKISKMDR TSILGDTIDY MKELLDRIHN LQEEMDLGSN QLSIFKDAKP  240
NEILVRNSPK FEVERRERET RIEISCGAKP GLLLSTVTTL EALGLEIEHC VISCFNDFSL  300
HASCSEELKK RGILETEDIK QALFRNAGYG GRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074290.10.0transcription factor bHLH93
SwissprotQ9LSL14e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2G9GXR61e-121A0A2G9GXR6_9LAMI; Uncharacterized protein
STRINGMigut.N02832.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-73beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]