PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073942.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 266aa    MW: 28690 Da    PI: 5.4968
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind72.76.7e-2336333102
                     HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  33 eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                     ++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+r+k 
  XP_011073942.1   3 PKEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKALLRDIQRRKI 63 
                     589********************************99.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-22361IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-19361IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-19361IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.3E-21361IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-101022IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-102335IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
LLPKEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFRRG EKALLRDIQR  60
RKISSSATPV AAAGTTAVAA NTQAAVSVVA LPPAVPVQIS PANSGDEQVL SSNSSPAAAG  120
ATTPMAVRSS TSAPEILEEN DRLRRENSQL SEELNRLRSL CGNIYNIMSN YAANQGDAST  180
GVLPEGGAMN LIQVMEGEEC GGGGKAEEEG ERWPKIFGVS IGAKRLKKNE EVEGEDQGQA  240
VGANAKSEPS ESGSNKNHDP QWLDKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-1756653125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073942.10.0heat stress transcription factor B-2b-like, partial
SwissprotQ9T0D33e-64HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2G9H0861e-108A0A2G9H086_9LAMI; Uncharacterized protein
STRINGMigut.A00803.1.p3e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-61HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]