PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073848.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 330aa    MW: 37387.5 Da    PI: 5.4309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11161204654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+++L
  XP_011073848.1 161 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMREL 204
                     589*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.10E-5145209No hitNo description
SuperFamilySSF474596.02E-15154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9161204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-15162215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00123256297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEITQQSLLE ELIMTPKIDN NNWIPFPNEV FPNSWSFAPF DHQTPDQQHL HSPTVANSSL  60
LQLISPAEFG HPCPFLDALT LPEISSFYDM DDVAAMPPVQ EEYVEEMNGE VGFLDNVVNG  120
FFKVETGQVV DTLINMDETG NDIGEKKSRA KKPNGQPSKN LMAERRRRKR LNDRLSMLRS  180
IVPKISKMDR TSILGDTIDY MRELLHKIHR LQEEGMSENL NHIIKLTANS SKDLKPNQVP  240
VRTPPKFDVE RRNKDTRVEV CCTAKPGLLI STLSTLDALG LDIHQCVISC FNDFSFQASC  300
YEVGEHRSFM SSEDVKQALF RNAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073848.10.0transcription factor bHLH93-like isoform X2
SwissprotQ9LSL13e-77BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2G9HVY41e-133A0A2G9HVY4_9LAMI; Uncharacterized protein
STRINGMigut.H00297.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-79beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]