PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073652.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 353aa    MW: 39365.5 Da    PI: 5.317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12179224555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L +++P +     kK++K ++L  A++Y+k+Lq
  XP_011073652.1 179 HIIAERKRREQLSQRFVALSTIVPGL-----KKMDKTSVLGDAIKYLKHLQ 224
                     899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.015174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-17175240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16179237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.59E-12179228No hitNo description
PfamPF000105.3E-10179224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.665283353IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDSSEVAWLS EMGLDNSFFM DQHDFMDCFD EELAAVLGQD FETCLSAGNN SSYSSTLINI  60
PSSNSINSLN TESPKMGCEP PHKLQKPNNY SNFSTINNQN LPTNPDRASS TPIILNFGNA  120
AENPQQVNPR PLNPDEEAAV SEVLRSQGSL PDPEEQSKRP QPTTKKPSRV RPPSQTYDHI  180
IAERKRREQL SQRFVALSTI VPGLKKMDKT SVLGDAIKYL KHLQERVKVL EEQATKQTME  240
SVVLVKKSQI MVEDEGSSDE KSGSSDEQPL PEIEARVCNN HILLRVHCEK HKGVLVNLLS  300
KVEKLNLTVV NTNVTPFGSL ALDITIVAEM DKEFNLTVKD VVKRLRAALL RIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073652.10.0transcription factor bHLH18-like
TrEMBLA0A2G9I4F10.0A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-55bHLH family protein