PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073188.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 561aa    MW: 60117 Da    PI: 5.9978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11373415754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+ Y+k+L
  XP_011073188.1 373 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIAYLKEL 415
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.231366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16369432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8372415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-12373419No hitNo description
Gene3DG3DSA:4.10.280.102.9E-15373428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.16E-6490550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MLSRVNSMVW MEGGKGEEET SSWAQNNKNG GLENKQELEI GALSTFKSML EAEGEDWYIS  60
NAAAAAASGH QATMHGHHHD ISFSPSFTEA ADNNQLLLQP VDSSASCSPT SASVFNSLDP  120
SQHQVNYFLQ PKSLISSIPN NPLEGTFDLG CENGYLEGAL NRAGGILSGG FNDLGAHSQM  180
GTLNLSSNTQ FGSNSLIQLP QGSGGFGGFG FGEGSMQGNS LFFNRSKILK PLDNFATIGA  240
QPTLFQKRAA LRKNLGGNGG SNLGSLNIRG ETNQISLKSP TSATNVEGYD KKGEVSEENE  300
RKRKNSSGDD VEDVSIDGST LNYDSDDQFL DNSAVNKVEE SAKNGGSSSH ANSTVTGGDQ  360
KGKKKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAIA YLKELLQKIN  420
DLHNELESIP GSSSVTPTTS FYPLTPTAPG LPARIKEELC PSAFASPLSS PTGQPARVEV  480
RLREGRAVNI HMFCGRRPGI LLSTMRAMEN LGLDIQQAVI SCFNGFALDV FRAEQCGEGQ  540
DLNPDQIKAV LLDSAGFHGM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14368425663Transcription factor MYC2
5gnj_B3e-14368425663Transcription factor MYC2
5gnj_E3e-14368425663Transcription factor MYC2
5gnj_F3e-14368425663Transcription factor MYC2
5gnj_G3e-14368425663Transcription factor MYC2
5gnj_I3e-14368425663Transcription factor MYC2
5gnj_M3e-14368425663Transcription factor MYC2
5gnj_N3e-14368425663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362380KKKGLPAKNLMAERRRRKK
2374381ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0401024e-56KJ040102.1 Sesamum indicum clone TilSSR_11303 microsatellite Sesame_11303 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073188.10.0transcription factor ICE1
TrEMBLA0A2G9G4590.0A0A2G9G459_9LAMI; Uncharacterized protein
STRINGXP_009769541.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-126bHLH family protein