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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 172aa MW: 19005.1 Da PI: 8.1419 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.8 | 5.2e-28 | 9 | 61 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eCl+NhAaslG++a+DGCgEf+ + +++ +l+CaACgCHRnFHR+ + XP_011073164.1 9 IYRECLRNHAASLGSYATDGCGEFTLD--DTAPGGGLNCAACGCHRNFHRKVIRS 61 7*************************8..4456799***************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.8E-23 | 9 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-22 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.34 | 10 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.6E-17 | 87 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-29 | 90 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.5E-30 | 99 | 157 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEGDSSNDIY RECLRNHAAS LGSYATDGCG EFTLDDTAPG GGLNCAACGC HRNFHRKVIR 60 SQTHDAAADV IVDYASGGSG RQQVTGMAYS PESSERGSKK RFRTKFTAEQ KEKMLGFAEK 120 LGWKLQRKDE EDEIERFCRG VGISRKVFKV WMHNHKNSPP HSAGNVSSLT DQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-23 | 98 | 162 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073164.1 | 1e-128 | zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q9SB61 | 4e-40 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2G9FYN7 | 1e-98 | A0A2G9FYN7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I00573.1.p | 1e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-42 | homeobox protein 22 |
Publications ? help Back to Top | |||
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