PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072947.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 393aa    MW: 43665.5 Da    PI: 5.063
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.75.8e-091861340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ +  k++++fC  ++ +lC++C ++ H+       H++v
  XP_011072947.1 18 ARACDSCLLKRARWFCAADDAFLCQSCDVSVHSAnqlasrHERV 61
                    578*****************************667888888876 PP
2CCT68.71.6e-23336379144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_011072947.1 336 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 379
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.5E-111663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8081663IPR000315B-box-type zinc finger
PfamPF006431.3E-71861IPR000315B-box-type zinc finger
CDDcd000211.35E-81963No hitNo description
PROSITE profilePS5101716.152336378IPR010402CCT domain
PfamPF062035.3E-18336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MNIVDQCKAA NALGGKTARA CDSCLLKRAR WFCAADDAFL CQSCDVSVHS ANQLASRHER  60
VRLEASSFKG SEGHSSPAWH QGFTRKARTP RQGKPAARLQ PLANHAFPLV PEINAEDGAF  120
SEENEEQFLY RVPVFDPFAD EFCSETVKGE EADGGHDLNL AELLSTCDDD LAEFAADVEN  180
LLGTGVEEGS GCPIHCKDED NGSDELLHGK GVKIEEDDDD DDEVQAVIAC HFDPALDMEL  240
NWDFDYVSSM ARQETKNVAA IETTSSMDSG SESHAKTRMF LRLNYEAVIA AWAAQGSPWT  300
NGVRPHFNLD DFMVTCLEGD SHPSCGGRSG ANDAEREARV LRYREKRRTR LFSKKIRYEV  360
RKLNAEKRPR MKGRFVKRTN FSGSSSLPYL INK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346362RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0491134e-58KJ049113.1 Sesamum indicum clone TilSSR_20314 microsatellite Sesame_20314 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072947.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A2G9H1F30.0A0A2G9H1F3_9LAMI; GATA-4/5/6 transcription factor
STRINGXP_009798338.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-86B-box type zinc finger protein with CCT domain