PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072770.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 617aa    MW: 68894.4 Da    PI: 6.5146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13436483355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+h   Er+RR+++N++f  L +l+P+      +K++K++iL +++eY+k+L+
  XP_011072770.1 436 RNHVLSERKRREKLNERFMILGSLVPSG-----GKVDKVSILDHTIEYLKELE 483
                     579999********************98.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5215198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.641433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11436483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-18436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-14436487No hitNo description
Gene3DG3DSA:4.10.280.102.7E-17437494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-17439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDTGNQSQKG VLENLRKQLA LAVRSIQWSY AIFWSISAKQ PGALEWGCGY YNGDIKTRKT  60
VQAVDVNADQ MGLQRSDQLR ELYESLSLGE TSPQPKRPTA ALSPEDLTDA EWYFLVCMSF  120
VFNIGQGLPG QTLTRNETVW LRNAHRADTK VFSRSLLAKS ASIQTVVCFP HLGGVIELGT  180
TELVSEDLNL IQHIKTSFLG SPSAVVPKIP DDGSNGTSDN NDICEVLDHA NVPEDNLDQL  240
LDCQEMDVCS PDNSSDDFPE NLLRDESHLV DGVDGEAPPM QNRQFKNDSM SNNSMNSSDC  300
VSQTYGNPET SIRPSDGKAA DSHTHGLQKF NQQKNDSSGF QGNDIHYQVV LSSLLKSSHQ  360
LVLGPYCRNR NRESSFLNWK DRLVSSRVPQ TATPQRLLKK VLFEVARMHE NCRLESGKQN  420
SKKDDVSRPD ADEIDRNHVL SERKRREKLN ERFMILGSLV PSGGKVDKVS ILDHTIEYLK  480
ELERKVEELE STRQSKPHDA VERTSDNYGP NKNKRKACET DKMAAESKRA RLRDSSTDSI  540
TVSIADKDVL IEMRCSWREC VLLEVMEAVT KLHLDSQTVQ SSNIDGILSV SIKAKCKGLK  600
GASAGLIRQA LQKVIRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-152819824192Transcription factor MYC3
4rqw_B1e-152819824192Transcription factor MYC3
4rs9_A1e-152819824192Transcription factor MYC3
4yz6_A1e-152819824192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446ERKRRE
2442447RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072770.10.0transcription factor EGL1-like
TrEMBLG3KGY30.0G3KGY3_ANTMA; Delila2
STRINGMigut.E01090.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-156bHLH family protein