PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072422.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92258.5 Da    PI: 6.725
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-191876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011072422.1 18 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5678*****************************************************97 PP
2START175.14.2e-551633712205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_011072422.1 163 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELL 256
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_011072422.1 257 YMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLTNTQNGPSmppVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNLEAWSVPEVLRPLY 351
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ +++ ++a+l+++++
  XP_011072422.1 352 ESSTVLAQRVTMAALRQLRQ 371
                     ****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751377IPR001356Homeobox domain
SMARTSM003892.4E-161581IPR001356Homeobox domain
SuperFamilySSF466892.99E-171681IPR009057Homeodomain-like
CDDcd000865.66E-171878No hitNo description
PfamPF000461.0E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-192076IPR009057Homeodomain-like
CDDcd146861.15E-670109No hitNo description
PROSITE profilePS5084825.29153381IPR002913START domain
CDDcd088752.20E-76157373No hitNo description
SMARTSM002342.6E-41162372IPR002913START domain
SuperFamilySSF559611.65E-38162374No hitNo description
Gene3DG3DSA:3.30.530.205.0E-23162368IPR023393START-like domain
PfamPF018521.4E-52163371IPR002913START domain
PfamPF086702.7E-50697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAMSCKDGNK AAAGSHGKYV RYTPEQVEAL ERLYHECPKP SSMRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSYFRQ  120
HTPNNPLASK DTSCESVVTS GQKHHLTPQP PPRDASPAGL LSIAEETLAE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIVAI SHGCSGVAAR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD  240
VLNVLPTANG GTIELLYMQL YAPTTLAPGR DFWLLRYTSV MDDGSLVVCE RSLTNTQNGP  300
SMPPVQNFVR AEMLPSGYLI RPCDGGGSII HIVDHMNLEA WSVPEVLRPL YESSTVLAQR  360
VTMAALRQLR QIAQDISQSS VTNWGRRPAA LRALSHRLGR GFNEALNGFS DDGWSLVGND  420
GMDDITILVN SNPDKLMGLN ISFASGYNSI CNSILCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADNNIDAY SAAAVKFGPC NFLGPRVGNF GGQVILPLAQ TVEHEELLEV IKLEGVAHSP  540
EDAMMPRDVL LLQLCSGMDE HAVGTCAELI FAPIDASFTD DAPLLPSGFR IIPLDSGKEA  600
SSPNRTLDLA SALETGTAGN KPSNDLSSTN GASRSVMTIA FQFAFESHMQ DNVASMARQY  660
VRSIISSVQR VALALSPSHL GPHAGLRSPL GTPEAHTLAR WICRSYRSYM GVELLKSSGE  720
GSESILKALW HHSDAIMCCS MKALPVFTFA NQAGLDMLET TLVALQDISL EKIFDDHGRK  780
NLCSEFPQIM HQGFGSLQGG ICLSSMGRPV SFERAEAWKV MNEDDNAHCI CFMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072422.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072422.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1V0JHU30.0A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRINGcassava4.1_001672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]